News

Oct 31st, 2017
The results are now available.

Oct 30th, 2017
The solutions are now available.

Sept 8th, 2017
Update for Challenge 15 available, but will not count in evaluation.

Sept 4th, 2017
Updated mailling list and submission information.

Aug 23rd, 2017
The preliminary results have been sent out to participants, and are now available.

July 09th, 2017
We fixed the intensities in the TSV archive for challenges 046-243.

June 22nd, 2017
We added the Category 4 on a subset of the data files.

May 22nd, 2017
We have improved challenges 29, 42, 71, 89, 105, 106 and 144.

April 26th, 2017
The rules and challenges of CASMI 2017 are public now !

Jan 20th, 2017
Organisation of CASMI 2017 is underway, stay tuned!


And the results are ...
Please use the tabs above to navigate to the individual categories for the results of the automatic evaluation, the submission abstracts and full details for each challenge and participant at the (+) links. At the end of this page there is a table legend.

The organising team would like to thank all participants for their contributions to the challenges this year and the many discussions on how to annotate and identify small molecules.

Category 1: Best Structure Identification on Natural Products

F1 score Mean rank Median rank Top Top3 Top10 Misses TopPos TopNeg Mean RRP Median RRP N
kai 469 235.02 4.0 11 19 28 4 9 2 0.965 0.999 45
kai112 350 266.00 3.0 12 14 16 17 9 3 0.985 1.000 45
CStacey 330 7.74 3.0 7 13 17 22 7 0 0.751 0.875 45
SamuelB2 319 12.12 4.0 6 12 21 16 4 2 0.929 0.982 45
SamuelB3 318 12.74 4.0 6 12 20 16 4 2 0.921 0.982 45
seeslab 237 18.29 13.0 4 10 15 12 3 1 0.926 0.957 45
SamuelB 229 15.43 9.0 4 8 17 16 2 2 0.904 0.931 45
Rakesh 192 1.89 1.0 6 8 9 36 4 2 0.998 1.000 45
The above table is also available as CSV download.

Category 2: Best Automatic Structural Identification - In Silico Fragmentation Only

F1 score Mean rank Median rank Top Top3 Top10 Misses TopPos TopNeg Mean RRP Median RRP N
kai_iso 2775 585.67 5.0 77 110 147 4 55 22 0.922 0.999 243
kai112 1373 513.93 9.0 38 55 74 102 28 10 0.937 0.999 243
yuanyuesimple 942 214.54 31.0 16 31 72 10 9 7 0.970 0.990 243
yuanyuesqrt 912 203.51 34.0 16 32 68 10 11 5 0.970 0.990 243
yuanyuelogsum 368 1165.47 260.0 7 14 27 10 5 2 0.831 0.941 243
Rakesh 109 939.83 333.0 0 0 5 28 0 0 0.852 0.906 243
The above table is also available as CSV download.

Category 3: Best Automatic Structural Identification - Full Information

F1 score Mean rank Median rank Top Top3 Top10 Misses TopPos TopNeg Mean RRP Median RRP N
tkind1 3707 4.33 2.0 91 148 193 34 52 39 0.644 0.750 238
tkind2 1704 15.20 6.0 29 63 107 72 15 14 0.755 0.846 240
TsugawaYamamoto 1559 19.99 7.0 28 56 104 64 16 12 0.841 0.900 243
The above table is also available as CSV download.

Category 4: Best Automatic Candidate Ranking

F1 score Mean rank Median rank Top Top3 Top10 Misses TopPos TopNeg Mean RRP Median RRP N
kai_iso 2306 658.28 5.0 66 91 119 0 46 20 0.913 0.999 198
kai112 2117 498.20 6.0 55 85 116 0 38 17 0.939 0.999 198
IOKRtransferAvgScore 1402 2740.56 201.0 36 59 73 0 20 16 0.681 0.955 198
IOKR_TanimotoGaussian 1212 3691.67 393.0 33 50 61 0 21 12 0.613 0.844 198
IOKRtransfer 1172 3733.52 396.0 31 48 60 0 19 12 0.609 0.832 198
yuanyuesimple 718 192.59 31.5 10 23 58 0 5 5 0.973 0.990 198
yuanyuesqrt 681 160.84 33.5 10 24 53 0 7 3 0.974 0.990 198
metfrag_plus 634 1750.18 142.0 6 21 51 0 2 4 0.811 0.966 198
metfrag 523 749.61 93.2 7 15 42 0 4 3 0.914 0.980 198
yuanyuelogsum 305 1248.99 253.2 5 12 22 0 4 1 0.833 0.956 198
Rakesh 301 607.01 135.5 0 2 19 2 0 0 0.904 0.962 198
The above table is also available as CSV download.

Table legend:

F1 score
The Formula 1 score awards points similar to the scheme in F1 racing for each challenge based on the rank of the correct solution. In the participant table, these are summed over all challenges. Please note that the F1 score is thus not neccessarily comparable across categories.
Mean/Median rank
Mean and median rank of the correct solution. For tied ranks with other candidates, the average rank of the ties is used.
Top, Top3, Top10
Number of challenges where the correct solution is ranked first, among the Top 3 and Top 10
Misses
Number of challenges where the correct solution is missing.
TopPos, TopNeg
Top1 ranked solutions in positive or negative ionization mode.
Mean/Median RRP
The relative ranking position, which is also incorporating the length of candidate list.
N
Number of submissions that have passed the evaluation scripts.